I wasn't meaning to be rude.
You say yourself that you are a nube. ANd you are trying to make Joomla into Dreamweaver. Doesn't make sense to me. Have no idea what you mean.
CustoMenu and Modules Anywhere can be installed via the normal Joomla installe, as explainedhere:
www.nonumber.nl/customenu/installing (and on all other extension pages).
And again, what you want to do can probably be done by making.changing the template you use (if it doesn't already have module positions in the places you need).
And you are a Computer Information Systems student but have no clue on how to run manual queries?
By the questions you ask (and statements you make) it comes across you DON'T know much about Joomla and how it works. So hence me saying you should first get your head wrapped around the basics before trying fancy stuff.